WebThe rpl32-trnL region proved to be a highly variable marker with good resolution in Batrachium, therefore it is deservedly used for phylogenetic studies of the section 5, 11, 15 . http://3w.detts.org/Item/8391.aspx
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WebAug 28, 2024 · Only two regions presented in all the three analyses—rpl32-trnL and ndhA intron. One of them (rpl32-trnL) has been used in previous studies to disentangle the origins of sweet potato (Roullier et al., 2013b). Like other angiosperms (Liu et al., 2024), the IR regions were more conserved than the SC regions in Ipomoea chloroplast genomes. WebJul 1, 2024 · The nucleotide diversity (Pi) value was calculated through alignment of the complete plastome sequences of different species using DnaSP v.6.0 (Rozas et al., 2024 ), with the window length set to 600 bp and a 200-bp step size. Values were plotted in the R program. Gene organization maps were drawn in TBtools v.1.064 ( Chen et al., 2024 ).
WebThree chloroplast regions (ndhF, rpl32-trnL, trnL-F) were amplified via polymerase chain reaction (PCR) using primers developed in Olmstead and Sweere (1994), Taberlet et al. … WebJul 4, 2024 · Comparative analysis of the chloroplast genomes revealed six divergent hotspot regions, including ndhA, rps16-trnQ-UUG, ndhF-rpl32, rps16-psbK, trnR-UCU-atpA and rpl32-trnL-UAG. According to the correlation and co-occurrence analysis of repeats with indels and SNPs, the relationship between them cannot be ignored.
WebJun 8, 2024 · The combination of the five gene regions (ndhF, trnS-G, trnC-petN, ndhF-rpl32, rpl32-trnL) increased the identification of species to 67% (Table 2, Fig. 5h). Fig. 4 Sliding … WebMar 11, 2024 · The boundaries of single copy regions and IR regions were highly conserved in the eight chloroplast genomes. In Ipomoea, 57-89 pairs of repetitive sequences and 39-64 simple sequence repeats were found. By conducting a sliding window analysis, we found six relatively high variable regions ( ndhA intron, ndhH - ndhF, ndhF - rpl32, rpl32 - trnL ...
WebJun 24, 2024 · A total of 8 highly variable regions (rps16-trnQ-UUG, trnS-GCU-trnG-UCC, rpl32-trnL-UAG, matK-rps16, petA-psbJ, trnT-UGU-trnL-UAA, accD-psaI, and trnC-GCA-petN) that might be useful as potential molecular markers for identifying Polygonatum species were identified. The molecular clock analysis results showed that the divergence time of ...
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